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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93719393_93719978_F

Intron Information:

Intron Rank:
133066
Intron Class:
major
Intron Phase:
Intron Coordinates:
93719393 - 93719978
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACATGC
5'SS Class:
major
3'SS Sequence:
TCTCTTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GATTGCATATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
62.9
38.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.3
0.66
1
78.5
33.7
Minor 5ss
38.4
-1.3
3
50.9
45.7
Minor BPS
47.5
-0.1
2.2
71.19
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021548
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026151
93719320 - 93721407
2088