About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93720079_93720513_F

Intron Information:

Intron Rank:
133067
Intron Class:
major
Intron Phase:
Intron Coordinates:
93720079 - 93720513
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TCTGAAAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACTAACTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
64.9
0.34
1.1
60.3
43.9
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
56.8
0.29
1.7
73.58
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021548
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026151
93719320 - 93721407
2088