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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93720699_93721367_F

Intron Information:

Intron Rank:
133068
Intron Class:
major
Intron Phase:
Intron Coordinates:
93720699 - 93721367
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGCACT
5'SS Class:
major
3'SS Sequence:
GGTTTGCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATATATCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
68.7
42
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
76.1
0.59
1
65.9
45.3
Minor 5ss
44.9
-0.5
2.9
69.2
40.9
Minor BPS
52.8
0.17
1.8
73.11
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021548
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026151
93719320 - 93721407
2088