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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93747183_93747518_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
93747183 - 93747518
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGTCTGTG
5'SS Class:
weak_major
3'SS Sequence:
AAGTCATTCAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
CCTGCCAAAACA
Flanking Amino Acid:
IRESESVEGAFYCLCLLTNF
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.2
0
1.2
50.5
40.2
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
54.6
0.11
1.1
52.9
40.1
Minor 5ss
45.1
-0.5
3.1
62.5
43.7
Minor BPS
47.3
-0.2
2.1
59.46
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013836
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025240
93745496 - 93757955
12460