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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93752653_93755331_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93752653 - 93755331
Intron Length:
2679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CTAACTTTATTT
Flanking Amino Acid:
REKRGYYKIQTSEGIPEKVF
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
75.1
0.62
1
65.6
41
Major PPT
86
0.81
0.7
80.5
24.8
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
54.7
0.23
1.6
69.04
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013836
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014422
93747064 - 93756116
9053