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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93768237_93768375_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93768237 - 93768375
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTTAA
U12 Branch Point Sequence:
TGTTCTCGAACA
Flanking Amino Acid:
LTLNEEVGEKLFHARNIHQT
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
26.3
Major BPS
55.5
0.14
1.1
47.4
37.5
Major PPT
89.4
0.89
0.6
88.9
20.3
Minor 5ss
36.1
-1.6
3.3
49.4
41.3
Minor BPS
58.7
0.27
1.8
74.1
37

Associated Gene:

Gene:
CIP2A
Ensembl Gene ID:
ENSAPLG00000013921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014543
93760577 - 93784936
24360