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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93768522_93769228_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93768522 - 93769228
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTATGCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TTTTTCTGCACC
Flanking Amino Acid:
KNPKVADYLTRYEHFTSCLG
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
65.7
0.35
1
58.6
42.3
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
62.1
0.36
1.9
78.77
36.7

Associated Gene:

Gene:
CIP2A
Ensembl Gene ID:
ENSAPLG00000013921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014543
93760577 - 93784936
24360