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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93769305_93770420_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93769305 - 93770420
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
TCACTTCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATTCACT
Flanking Amino Acid:
HGKDPNSSSKILELLLAFCS
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
74.8
0.56
0.9
69.1
35.9
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
63.7
0.51
2.1
84.99
41.5

Associated Gene:

Gene:
CIP2A
Ensembl Gene ID:
ENSAPLG00000013921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014543
93760577 - 93784936
24360