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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93770649_93771147_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93770649 - 93771147
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAGAG
5'SS Class:
major
3'SS Sequence:
AAATTTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TAGTTCTAAACA
Flanking Amino Acid:
ALQLFKEIFEDAINSGNSAS
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
57.1
42.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73.9
0.54
1
66.6
42.9
Minor 5ss
34.2
-1.8
3.6
46.7
48.6
Minor BPS
64.4
0.45
1.7
71.83
40.4

Associated Gene:

Gene:
CIP2A
Ensembl Gene ID:
ENSAPLG00000013921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014543
93760577 - 93784936
24360