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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93771308_93772338_F

Intron Information:

Intron Rank:
10
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
93771308 - 93772338
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
TAG|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TAACTCAATCTAC|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
TAAAACTTAACT
Flanking Amino Acid:
RMVKAINVLIVLCRDDILKM
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
38.4
-0.7
3.5
62.3
44.7
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
36.9
-0.7
3.1
45.2
41.1
Minor 5ss
100
1.66
0.5
100
0
Minor BPS
68.5
0.66
1.5
80.69
39.9

Associated Gene:

Gene:
CIP2A
Ensembl Gene ID:
ENSAPLG00000013921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014543
93760577 - 93784936
24360