About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93772481_93773224_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
93772481 - 93773224
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
GTATGTTGAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTTTTTTCCACT
Flanking Amino Acid:
FGAKVVDSKMCKLAADTILK
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.3
37.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
51.4
0.03
1.2
52.8
45
Minor 5ss
39.8
-1.1
2.8
47
42.5
Minor BPS
51.3
0.12
2
74.97
42.5

Associated Gene:

Gene:
CIP2A
Ensembl Gene ID:
ENSAPLG00000013921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014543
93760577 - 93784936
24360