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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93773325_93774158_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93773325 - 93774158
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTACTCTTATAT
Flanking Amino Acid:
MEVSFYKILQDQRLIAPLTF
Intron Amino Acid Position:
603

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
86.3
29
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.2
0.81
0.7
85.1
29.7
Minor 5ss
45.5
-0.5
2.9
66.2
44.9
Minor BPS
57.1
0.3
1.7
75.55
40.6

Associated Gene:

Gene:
CIP2A
Ensembl Gene ID:
ENSAPLG00000013921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014543
93760577 - 93784936
24360