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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93778794_93778876_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93778794 - 93778876
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CATCTTTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AATACATGAATG
Flanking Amino Acid:
VYEQKLASLASKESRLQDLL
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
70.1
35.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
72.6
0.51
0.9
67.7
37.4
Minor 5ss
33.5
-1.9
2.7
44.7
42.7
Minor BPS
48.2
-0.2
1.8
54.58
39.9

Associated Gene:

Gene:
CIP2A
Ensembl Gene ID:
ENSAPLG00000013921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014543
93760577 - 93784936
24360