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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93779463_93780957_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93779463 - 93780957
Intron Length:
1495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
AATTTATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCCTCTTCAACC
Flanking Amino Acid:
LKKSSVDLLQRYETTERQHK
Intron Amino Acid Position:
834

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
76.8
0.6
0.9
71.2
38.9
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
64.9
0.45
1.6
70.01
41.9

Associated Gene:

Gene:
CIP2A
Ensembl Gene ID:
ENSAPLG00000013921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014543
93760577 - 93784936
24360