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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93783642_93784692_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93783642 - 93784692
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
GAAATAGTAACT
Flanking Amino Acid:
EQARKELSIKASSLEVQKSQ
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
44
-0.3
2.2
60.81
42

Associated Gene:

Gene:
CIP2A
Ensembl Gene ID:
ENSAPLG00000013921
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014543
93760577 - 93784936
24360