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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93806109_93809197_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
93806109 - 93809197
Intron Length:
3089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
GGTTCAAGAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
68.9
0.47
1
75
30
Major PPT
78.1
0.63
0.9
80.2
31.9
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
45.4
-0.2
2
67.05
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004828
93805731 - 93845265
39535