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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93814418_93815321_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93814418 - 93815321
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CTTCTTCCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CTAATGTTACAT
Flanking Amino Acid:
RNRENQSMLITGESGAGKTV
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.3
78.8
35.5
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
76.6
0.6
0.7
69.8
31
Minor 5ss
36.7
-1.5
3.3
49.9
39.7
Minor BPS
41.5
-0.5
2.3
57.95
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036474
93809253 - 93848098
38846
ENSAPLT00000004828
93805731 - 93845265
39535