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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93818763_93821134_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93818763 - 93821134
Intron Length:
2372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
AATTCTTTTACA
Flanking Amino Acid:
ILSGKKPELLDMLLVSTNPY
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
83.3
0.75
0.8
76.8
36.4
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
67.7
0.55
1.6
74.8
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036474
93809253 - 93848098
38846
ENSAPLT00000004828
93805731 - 93845265
39535