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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93823747_93824518_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93823747 - 93824518
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTAACTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTCCTTTTAACT
Flanking Amino Acid:
LDIAGFEIFDFNSFEQLCIN
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.8
0.6
0.9
70.4
35.9
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
67.5
0.63
1.3
76.22
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036474
93809253 - 93848098
38846
ENSAPLT00000004828
93805731 - 93845265
39535