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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93826157_93827457_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93826157 - 93827457
Intron Length:
1301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
CACCTTGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
ATGCTTTCAACA
Flanking Amino Acid:
HFELLHYAGAVPYNIIGWLE
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
69.9
35.6
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
67.3
0.39
0.9
61.4
34.6
Minor 5ss
43.7
-0.7
2.7
59.7
38.5
Minor BPS
54
0.12
1.5
62.95
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036474
93809253 - 93848098
38846
ENSAPLT00000004828
93805731 - 93845265
39535