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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_93842006_93842745_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93842006 - 93842745
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
CTGAAAATAAAT
Flanking Amino Acid:
TLKRENKNLQEEISDLTNQI
Intron Amino Acid Position:
1508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
89.5
0.89
0.7
88.2
29.1
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
41
-0.6
2
57.59
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036474
93809253 - 93848098
38846
ENSAPLT00000004828
93805731 - 93845265
39535