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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94017681_94018780_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
94017681 - 94018780
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTTAATCTG
5'SS Class:
weak_major
3'SS Sequence:
ATGTCTACCTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CTTTTATTAAAA
Flanking Amino Acid:
LIWKCLMHKPSIIFYIG
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.5
0.08
1.2
52.2
44.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
49.4
-0
1.7
59.7
41
Minor 5ss
35.7
-1.6
3
48.3
41.3
Minor BPS
62
0.37
1.7
73.41
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039302
94017658 - 94018991
1334