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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94037298_94039531_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94037298 - 94039531
Intron Length:
2234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTGATTTAAAA
Flanking Amino Acid:
TIINKLKPSNAQTQDIVPTI
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.8
34.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.1
0.79
0.7
80.4
25
Minor 5ss
39.9
-1.1
2.9
56.1
41.4
Minor BPS
60.2
0.32
1.7
73.42
38.3

Associated Gene:

Gene:
ARL6
Ensembl Gene ID:
ENSAPLG00000004069
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032419
94037147 - 94052295
15149
ENSAPLT00000004187
94037147 - 94052306
15160
ENSAPLT00000047662
94037147 - 94049820
12674