Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94039594_94041297_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

94039594 - 94041297

Intron Length:

1704

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCAGTT

5'SS Class:

major

3'SS Sequence:

CTTTTCTTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTGAT

U12 Branch Point Sequence:

TTTTCTTTACAG

Flanking Amino Acid:

GFSIEKFKTSSLSFTVFDMS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.47

1.2

69.9

41.1

Major BPS

58.4

0.21

1.4

51.1

46.3

Major PPT

92.4

0.95

0.6

87.4

23.1

Minor 5ss

40.5

-1.1

3.8

64.3

47.2

Minor BPS

63.6

0.29

1.8

72.3

40.7

Associated Gene:

Gene:

ARL6

Ensembl Gene ID:

ENSAPLG00000004069

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047662

94037147 - 94049820

12674

ENSAPLT00000032419

94037147 - 94052295

15149

ENSAPLT00000004187

94037147 - 94052306

15160