About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94048206_94049636_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94048206 - 94049636
Intron Length:
1431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATCTTT
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
GTCTTCATAATT
Flanking Amino Acid:
ENIKDKPWHICASDALKGEG
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
73.4
38.1
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
50.1
0
2.8
70.5
42
Minor BPS
62.6
0.48
1.6
77.07
39.7

Associated Gene:

Gene:
ARL6
Ensembl Gene ID:
ENSAPLG00000004069
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047662
94037147 - 94049820
12674
ENSAPLT00000032419
94037147 - 94052295
15149
ENSAPLT00000004187
94037147 - 94052306
15160