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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94049817_94052269_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94049817 - 94052269
Intron Length:
2453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTTATTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAACA
Flanking Amino Acid:
GVDWLQDQITQSDPSNEDMR
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.6
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.1
0.79
0.9
81.9
33.5
Minor 5ss
35.1
-1.7
2.8
49.5
40.3
Minor BPS
78.3
0.88
1.4
88.34
28.1

Associated Gene:

Gene:
ARL6
Ensembl Gene ID:
ENSAPLG00000004069
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004187
94037147 - 94052306
15160