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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94057278_94081017_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94057278 - 94081017
Intron Length:
23740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAATAT
U12 Branch Point Sequence:
TGTTGCAAAATA
Flanking Amino Acid:
MHSEFYSSEHKGSEAI
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
85.3
27
Major BPS
50.9
0.02
1.1
47.4
35.7
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
40.1
-1.1
2.7
50.2
46
Minor BPS
46.5
-0.2
2.3
64.78
41.9

Associated Gene:

Gene:
CRYBG3
Ensembl Gene ID:
ENSAPLG00000004185
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004320
94057258 - 94158403
101146