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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9410840_9411046_F

Intron Information:

Intron Rank:
135679
Intron Class:
major
Intron Phase:
Intron Coordinates:
9410840 - 9411046
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
CCCCTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ACTTTGATAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
60.6
44.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
77.7
0.62
0.7
76.2
25.9
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
46.8
-0.2
2.2
60.7
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020287
9410744 - 9411869
1126