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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_9411245_9411782_F

Intron Information:

Intron Rank:
135680
Intron Class:
major
Intron Phase:
Intron Coordinates:
9411245 - 9411782
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATATTTA
5'SS Class:
major
3'SS Sequence:
TGTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TGTTCTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
71.8
33.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
49.4
-0
2.5
63.4
43.4
Minor BPS
47
-0.1
3.4
79.17
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023019
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020287
9410744 - 9411869
1126