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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94120994_94122333_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94120994 - 94122333
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CCAATTGTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTATCCCAATT
Flanking Amino Acid:
KNPYISVKSGVWLGYSDYNY
Intron Amino Acid Position:
1983

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
67
0.38
1
60.4
40.1
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
52.3
0.15
1.9
77.56
38.8

Associated Gene:

Gene:
CRYBG3
Ensembl Gene ID:
ENSAPLG00000004185
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037234
94062387 - 94157403
95017
ENSAPLT00000004320
94057258 - 94158403
101146