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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94122449_94123996_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94122449 - 94123996
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGACT
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATATAAAT
Flanking Amino Acid:
DVKSLRPLKMGGLKVQMPMN
Intron Amino Acid Position:
2022

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
73.9
36.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92
0.94
0.5
92.2
18.2
Minor 5ss
29.6
-2.3
3.1
37.9
40.9
Minor BPS
58.6
0.35
1.9
83.5
36.8

Associated Gene:

Gene:
CRYBG3
Ensembl Gene ID:
ENSAPLG00000004185
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037234
94062387 - 94157403
95017
ENSAPLT00000004320
94057258 - 94158403
101146