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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94132468_94134790_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94132468 - 94134790
Intron Length:
2323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TGCCATTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTCAGTTTATT
Flanking Amino Acid:
ETRSILVRSGVWVAYQQKHF
Intron Amino Acid Position:
2168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
77.8
0.63
0.9
68.7
41.7
Minor 5ss
39.8
-1.1
3
51.1
45.2
Minor BPS
46.5
-0.1
2.4
74.57
42

Associated Gene:

Gene:
CRYBG3
Ensembl Gene ID:
ENSAPLG00000004185
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037234
94062387 - 94157403
95017
ENSAPLT00000004320
94057258 - 94158403
101146