About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94134918_94135958_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94134918 - 94135958
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATATTTATTA
Flanking Amino Acid:
IIMSIRPIKLEPLGTNEPPH
Intron Amino Acid Position:
2211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.8
0.83
0.8
81.9
34.3
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
51.5
0.04
1.7
63.44
37

Associated Gene:

Gene:
CRYBG3
Ensembl Gene ID:
ENSAPLG00000004185
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037234
94062387 - 94157403
95017
ENSAPLT00000004320
94057258 - 94158403
101146