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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94140187_94140737_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94140187 - 94140737
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTATTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TAATCTTTATTT
Flanking Amino Acid:
IPCSFKVLRGCWLLYYQGEI
Intron Amino Acid Position:
2258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.7
0.76
0.8
77.1
36.4
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
65.4
0.56
1.5
77.84
38.8

Associated Gene:

Gene:
CRYBG3
Ensembl Gene ID:
ENSAPLG00000004185
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037234
94062387 - 94157403
95017
ENSAPLT00000004320
94057258 - 94158403
101146