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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94160260_94161348_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94160260 - 94161348
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAC
U12 Branch Point Sequence:
TTTTCTTTTCCT
Flanking Amino Acid:
DATTEEGMSQQTHGLRFPLS
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
69.6
35.5
Major BPS
68.3
0.45
1
69.6
32.8
Major PPT
88.3
0.86
0.7
81.3
30.7
Minor 5ss
43.9
-0.7
2.3
54.4
42.7
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
RIOX2
Ensembl Gene ID:
ENSAPLG00000004703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004851
94159552 - 94172220
12669