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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94161463_94162756_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94161463 - 94162756
Intron Length:
1294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TGCTGTCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
GGATACGTAATT
Flanking Amino Acid:
ITVEPDQENSDEVRREMVYV
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
70.6
0.46
0.9
64.7
36.6
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
48.6
-0
2.2
67.66
42.8

Associated Gene:

Gene:
RIOX2
Ensembl Gene ID:
ENSAPLG00000004703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004851
94159552 - 94172220
12669