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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94163271_94163916_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94163271 - 94163916
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATAGG
5'SS Class:
major
3'SS Sequence:
TGTGAATATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTGTGTGAATA
Flanking Amino Acid:
RTSIPRQLLMQVDIADSTKK
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.8
43.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
67.9
0.4
1.1
63.4
46.3
Minor 5ss
34.6
-1.7
2.8
39.3
41.2
Minor BPS
45.7
-0.3
2.2
58.85
41.8

Associated Gene:

Gene:
RIOX2
Ensembl Gene ID:
ENSAPLG00000004703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004851
94159552 - 94172220
12669