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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94164020_94165170_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94164020 - 94165170
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAATTTTT
5'SS Class:
major
3'SS Sequence:
TCCTGTCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
ATTTTAGTAATT
Flanking Amino Acid:
THVTISTYQNNSWGDFLLDA
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
83.5
28.7
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
78.9
0.65
0.8
72.2
32.6
Minor 5ss
47.9
-0.2
2.8
67.6
37.2
Minor BPS
52.6
0.16
2.2
78.9
37.5

Associated Gene:

Gene:
RIOX2
Ensembl Gene ID:
ENSAPLG00000004703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004851
94159552 - 94172220
12669