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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94165275_94167780_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94165275 - 94167780
Intron Length:
2506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTAA
5'SS Class:
major
3'SS Sequence:
CATTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTCTTTTCATT
Flanking Amino Acid:
GKPTHEFVLKPGDLLYFPRG
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.4
35
Major BPS
100
1.24
0.5
100
0
Major PPT
86.3
0.82
0.8
80.9
30.7
Minor 5ss
42.2
-0.9
3.1
55.3
48.9
Minor BPS
55.1
0.24
1.7
74.8
36.5

Associated Gene:

Gene:
RIOX2
Ensembl Gene ID:
ENSAPLG00000004703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004851
94159552 - 94172220
12669