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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94169099_94171547_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94169099 - 94171547
Intron Length:
2449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGGTCA
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATCAT
U12 Branch Point Sequence:
TTCTCTCTAAAG
Flanking Amino Acid:
IQFHQPQRFKEELWKIQEKL
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
61.4
39.8
Major BPS
66.8
0.42
1.1
68
37.7
Major PPT
78
0.63
1
79
27.2
Minor 5ss
32
-2.1
3.3
39.5
46
Minor BPS
55.9
0.05
1.9
65.15
42.7

Associated Gene:

Gene:
RIOX2
Ensembl Gene ID:
ENSAPLG00000004703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004851
94159552 - 94172220
12669