About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94182109_94184869_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94182109 - 94184869
Intron Length:
2761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTCATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
TTTTTCTCATTA
Flanking Amino Acid:
SSGLAFYSSTGWYNRLFINF
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.1
59.6
35.1
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
81.9
0.72
0.8
83.2
26.9
Minor 5ss
41.6
-0.9
3.2
51.6
47.5
Minor BPS
59.7
0.3
1.8
75.01
37

Associated Gene:

Gene:
GABRR3
Ensembl Gene ID:
ENSAPLG00000004746
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004892
94178814 - 94202037
23224