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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94188775_94190292_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
94188775 - 94190292
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TAATTAAACAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
SIDSISEVDMDFTMTLYLRH
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
41.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
51.1
0.03
1.2
50.6
40.8
Minor 5ss
39.7
-1.2
2.8
46.4
44.2
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
GABRR3
Ensembl Gene ID:
ENSAPLG00000004746
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004892
94178814 - 94202037
23224