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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94190361_94199796_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94190361 - 94199796
Intron Length:
9436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTACTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATTCTGTTACTT
Flanking Amino Acid:
HDFALRPGFGGSPIPVGIDV
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
72
0.49
1.1
72
38
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
47.6
-0.1
2.2
70.9
40.7

Associated Gene:

Gene:
GABRR3
Ensembl Gene ID:
ENSAPLG00000004746
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004892
94178814 - 94202037
23224