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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94257101_94262663_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94257101 - 94262663
Intron Length:
5563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
TGGCCTTTCAGT
Flanking Amino Acid:
RGTAIGDRIMRRSAVARIQE
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
72.2
0.5
0.9
66.3
39.7
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
47.7
-0.1
2
65.58
45.1

Associated Gene:

Gene:
DCAF6
Ensembl Gene ID:
ENSAPLG00000004966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024651
94244238 - 94325410
81173
ENSAPLT00000044418
94244238 - 94325410
81173
ENSAPLT00000042652
94244238 - 94325410
81173
ENSAPLT00000042304
94244238 - 94325410
81173
ENSAPLT00000040046
94244238 - 94325410
81173