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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94257101_94267569_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94257101 - 94267569
Intron Length:
10469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGAGGA
5'SS Class:
major
3'SS Sequence:
GTGCTATTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
TGGCCTTTCAGT
Flanking Amino Acid:
GARYRGGPGHRRSAVARIQE
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
67.3
38.3
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
72.2
0.5
0.9
66.3
39.7
Minor 5ss
26.2
-2.7
3
30.9
42.4
Minor BPS
47.7
-0.1
2
65.58
45.1

Associated Gene:

Gene:
DCAF6
Ensembl Gene ID:
ENSAPLG00000004966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005181
94243901 - 94325410
81510