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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94262706_94267569_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94262706 - 94267569
Intron Length:
4864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGAGGA
5'SS Class:
major
3'SS Sequence:
TTCCCTTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTTCCCTTTACT
Flanking Amino Acid:
GARYRGGPGHRYNIRGTAIG
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
67.3
38.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.1
0.56
0.8
70.1
35.1
Minor 5ss
26.2
-2.7
3
30.9
42.4
Minor BPS
72.8
0.8
1.6
87.18
37.7

Associated Gene:

Gene:
DCAF6
Ensembl Gene ID:
ENSAPLG00000004966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042304
94244238 - 94325410
81173
ENSAPLT00000040046
94244238 - 94325410
81173
ENSAPLT00000024651
94244238 - 94325410
81173
ENSAPLT00000044418
94244238 - 94325410
81173
ENSAPLT00000042652
94244238 - 94325410
81173