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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94267895_94268069_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94267895 - 94268069
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGTC
5'SS Class:
major
3'SS Sequence:
TATTTTCTATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACCAATA
Flanking Amino Acid:
TDETIETTEATVSDQPVTEH
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
75.1
33.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.7
0.65
0.9
79.3
33.7
Minor 5ss
45
-0.5
3.1
60.9
38.3
Minor BPS
50.9
0.03
2.1
74.04
37.3

Associated Gene:

Gene:
DCAF6
Ensembl Gene ID:
ENSAPLG00000004966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040046
94244238 - 94325410
81173
ENSAPLT00000024651
94244238 - 94325410
81173
ENSAPLT00000044418
94244238 - 94325410
81173
ENSAPLT00000005181
94243901 - 94325410
81510
ENSAPLT00000042652
94244238 - 94325410
81173
ENSAPLT00000042304
94244238 - 94325410
81173