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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94272968_94278145_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94272968 - 94278145
Intron Length:
5178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGCGTGAC
5'SS Class:
major
3'SS Sequence:
CCCATATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
ACTTTATCAACC
Flanking Amino Acid:
LGSMSLDEQQESDKPRAGTG
Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
63
37.9
Major BPS
79
0.72
1
80.3
31.7
Major PPT
75.2
0.57
0.9
67.8
36.6
Minor 5ss
26
-2.8
3.1
25.3
37.4
Minor BPS
53.6
0.09
1.8
65.93
39.5

Associated Gene:

Gene:
DCAF6
Ensembl Gene ID:
ENSAPLG00000004966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042652
94244238 - 94325410
81173
ENSAPLT00000024651
94244238 - 94325410
81173
ENSAPLT00000005181
94243901 - 94325410
81510
ENSAPLT00000044418
94244238 - 94325410
81173