About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94272968_94284009_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94272968 - 94284009
Intron Length:
11042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGTCATT
5'SS Class:
major
3'SS Sequence:
CCCATATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
ACTTTATCAACC
Flanking Amino Acid:
KGSSQDPQASESDKPRAGTG
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1.3
66.7
44.3
Major BPS
79
0.72
1
80.3
31.7
Major PPT
75.2
0.57
0.9
67.8
36.6
Minor 5ss
40.4
-1.1
3.2
58.2
46
Minor BPS
53.6
0.09
1.8
65.93
39.5

Associated Gene:

Gene:
DCAF6
Ensembl Gene ID:
ENSAPLG00000004966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040046
94244238 - 94325410
81173