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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_94278206_94284009_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94278206 - 94284009
Intron Length:
5804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGTCATT
5'SS Class:
major
3'SS Sequence:
ATTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TATGTTTTAAGT
Flanking Amino Acid:
KGSSQDPQASDSPSSVVNKQ
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1.3
66.7
44.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
87.1
0.83
0.8
85.1
34.9
Minor 5ss
40.4
-1.1
3.2
58.2
46
Minor BPS
60
0.39
1.7
75.92
41.3

Associated Gene:

Gene:
DCAF6
Ensembl Gene ID:
ENSAPLG00000004966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044418
94244238 - 94325410
81173
ENSAPLT00000042652
94244238 - 94325410
81173
ENSAPLT00000005181
94243901 - 94325410
81510